ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e4oytC1 - ECOD Domain | ECOD

ECOD/Domains/e4oytC1

e4oytC1

UID: 001423179

PDB

Range: C:291-442
PDB: 4OYT chain C(all domains)
UniProt: A5K8L9 (all domains)
Gene: PVX_100730

Molecule: Serine hydroxymethyltransferase, putative

3D Structure

Loading viewer...

Related Domains

Browse other domains in SHMT →

Classification

AArchitecturea+b two layers(a.11)

XX-groupC-terminal domain in some PLP-dependent transferases(3016)

HH-groupC-terminal domain in some PLP-dependent transferases(3016.1)

TT-groupC-terminal domain in some PLP-dependent transferases(3016.1.1)

FFamilySHMT(3016.1.1.5)

Ligands

in contact, ≤ 4 Å

(6R)-Folinic acidFON
drugDrugBank DB03256within 5 Å only
(2R)-2-[(E)-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3-oxidanyl-propanoic acid1W9

Pfam Families

Serine hydroxymethyltransferase

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 4OYT RCSB PDB: 4OYT PDBe: 4OYT UniProt: A5K8L9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (Tromethamine)

TromethamineTRS
DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.