ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4u3nq21 - ECOD Domain | ECOD

ECOD/Domains/e4u3nq21

e4u3nq21

UID: 001424864

PDB

Range: q2:2-106
PDB: 4U3N chain q2(all domains)
UniProt: P0CX27 (all domains)
Gene: RPL42A

Molecule: 60S ribosomal protein L42-A

3D Structure

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Related Domains

Browse other domains in Ribosomal_L44 →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRubredoxin-like(375)

HH-groupRubredoxin-related(375.1)

TT-groupRubredoxin-related(375.1.1)

FFamilyRibosomal_L44(375.1.1.5)

Ligands

in contact, ≤ 4 Å

Adenosine phosphateA
drugDrugBank DB00131within 5 Å only
Cytidine-5'-MonophosphateC
drugDrugBank DB03403

Pfam Families

PF00935Ribosomal_L44

Ribosomal protein L44

ClanCL0167Zn_Beta_Ribbon

External Links

ECOD PDB View: 4U3N RCSB PDB: 4U3N PDBe: 4U3N UniProt: P0CX27

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

within 5 Å only

Magnesium ionMG

metal

osmium (III) hexammineOHX

Zinc ionZN

metal

Shown in the structure viewer. Drug annotations from DrugDomain.