ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3mzdA2 - ECOD Domain | ECOD

ECOD/Domains/e3mzdA2

e3mzdA2

UID: 000142674

PDB

Range: A:40-158
PDB: 3MZD chain A(all domains)
UniProt: P0AEB2 (all domains)
Gene: dacA

Molecule: D-alanyl-D-alanine carboxypeptidase dacA

3D Structure

Loading viewer...

Related Domains

Browse other domains in Peptidase_S11 →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019)

HH-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1)

TT-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1.1)

FFamilyPeptidase_S11(4019.1.1.2)

Ligands

in contact, ≤ 4 Å

(2R,4S)-2-[(1S)-1-({[3-(2-chlorophenyl)-5-methyl-1,2-oxazol-4-yl]carbonyl}amino)-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acidCXV

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer.

Pfam Families

PF00768Peptidase_S11

D-alanyl-D-alanine carboxypeptidase

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 3MZD RCSB PDB: 3MZD PDBe: 3MZD UniProt: P0AEB2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.