ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3ai9X1 - ECOD Domain | ECOD

ECOD/Domains/e3ai9X1

e3ai9X1

UID: 000142819

PDB

Range: X:1-205
PDB: 3AI9 chain X(all domains)
UniProt: Q59034 (all domains)
Gene: trmY

Molecule: UPF0217 protein MJ1640

3D Structure

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Related Domains

Browse other domains in Methyltrn_RNA_2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilyMethyltrn_RNA_2(2488.1.1.8)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118
Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF04013Methyltrn_RNA_2

Putative SAM-dependent RNA methyltransferase

ClanCL0098SPOUT

External Links

ECOD PDB View: 3AI9 RCSB PDB: 3AI9 PDBe: 3AI9 UniProt: Q59034

Downloads

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