ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3s8fA1 - ECOD Domain | ECOD

ECOD/Domains/e3s8fA1

e3s8fA1

UID: 000144061

PDB

Range: A:9-562
PDB: 3S8F chain A(all domains)
UniProt: Q5SJ79 (all domains)
Gene: cbaA

Molecule: Cytochrome c oxidase subunit 1

3D Structure

Loading viewer...

Related Domains

Browse other domains in COX1 →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupCytochrome c oxidase subunit I-like(5038)

HH-groupCytochrome c oxidase subunit I-like(5038.1)

TT-groupCytochrome c oxidase subunit I-like(5038.1.1)

FFamilyCOX1(5038.1.1.1)

Ligands

in contact, ≤ 4 Å

FerrohemeHEM
drugDrugBank DB18267
COPPER (II) IONCU
metal
Heme-asHAS

Pfam Families

Cytochrome C and Quinol oxidase polypeptide I

ClanCL0714COX1-like

External Links

ECOD PDB View: 3S8F RCSB PDB: 3S8F PDBe: 3S8F UniProt: Q5SJ79

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoateOLC

Peroxide ionPER

Shown in the structure viewer. Drug annotations from DrugDomain.