ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3t0pA1 - ECOD Domain | ECOD

ECOD/Domains/e3t0pA1

e3t0pA1

UID: 000144175

PDB

Range: A:0-120
PDB: 3T0P chain A(all domains)
UniProt: C4Z938 (all domains)
Gene: EUBREC_0002

Molecule: DNA polymerase III, beta subunit

3D Structure

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Related Domains

Browse other domains in DNA_pol3_beta →

Classification

AArchitecturea+b two layers(a.11)

XX-groupDNA clamp(227)

HH-groupDNA clamp(227.1)

TT-groupDNA clamp(227.1.1)

FFamilyDNA_pol3_beta(227.1.1.3)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
within 5 Å only

+ 2 additives (Acetate, 1,2-ETHANEDIOL)

AcetateACT
DrugBank DB14511within 5 Å only
1,2-ETHANEDIOL

Pfam Families

PF00712DNA_pol3_beta

DNA polymerase III beta subunit, N-terminal domain

ClanCL0060DNA_clamp

External Links

ECOD PDB View: 3T0P RCSB PDB: 3T0P PDBe: 3T0P UniProt: C4Z938

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.