ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4v8kB31 - ECOD Domain | ECOD

ECOD/Domains/e4v8kB31

e4v8kB31

UID: 001442226

PDB

Range: B3:2-61
PDB: 4V8K chain B3(all domains)
UniProt: D2Z0P2 (all domains)
Gene: pufA

Molecule: LH1 alpha polypeptide

3D Structure

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Related Domains

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Classification

AArchitectureextended segments(a.20)

XX-groupBacterial light-harvesting complex subunits(5074)

HH-groupBacterial light-harvesting complex subunits(5074.1)

TT-groupBacterial light-harvesting complex subunits(5074.1.1)

FFamilyLHC(5074.1.1.1)

Ligands

in contact, ≤ 4 Å

Bacteriochlorophyll ABCL
drugDrugBank DB01853
Calcium ionCA
metal
Spirilloxanthin

Pfam Families

Antenna complex alpha/beta subunit

External Links

ECOD PDB View: 4V8K RCSB PDB: 4V8K PDBe: 4V8K UniProt: D2Z0P2

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.