ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4v8pFK1 - ECOD Domain | ECOD

ECOD/Domains/e4v8pFK1

e4v8pFK1

UID: 001442631

PDB

Range: FK:78-129
PDB: 4V8P chain FK(all domains)
UniProt: P0DJ25 (all domains)
Gene: RPL40

Molecule: UBIQUITIN-60S RIBOSOMAL PROTEIN L40

3D Structure

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Related Domains

Browse other domains in Ribosomal_L40e →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRubredoxin-like(375)

HH-groupRubredoxin-related(375.1)

TT-groupRubredoxin-related(375.1.1)

FFamilyRibosomal_L40e(375.1.1.6)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01020Ribosomal_L40e

Ribosomal L40e family

ClanCL0167Zn_Beta_Ribbon

External Links

ECOD PDB View: 4V8P RCSB PDB: 4V8P PDBe: 4V8P UniProt: P0DJ25

Downloads

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