ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3o4nA1 - ECOD Domain | ECOD

ECOD/Domains/e3o4nA1

e3o4nA1

UID: 000144454

PDB

Range: A:59-199
PDB: 3O4N chain A(all domains)
UniProt: O92956 (all domains)
Gene: gag-pol

Molecule: integrase

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 1 additive (2-(N-morpholino)ethanesulfonic acid)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814

Shown in the structure viewer.

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 3O4N RCSB PDB: 3O4N PDBe: 3O4N UniProt: O92956

Downloads

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Drug annotations from DrugDomain.