ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3nsjA1 - ECOD Domain | ECOD

ECOD/Domains/e3nsjA1

e3nsjA1

UID: 000146275

RepresentativePDB

Range: A:21-373
PDB: 3NSJ chain A(all domains)
UniProt: P10820 (all domains)
Gene: Prf1

Molecule: Perforin-1

3D Structure

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Related Domains

Browse other domains in MACPF →

Classification

AArchitecturebeta complex topology(a.5)

XX-groupMembrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains(5089)

HH-groupMembrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains(5089.1)

TT-groupMembrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains(5089.1.1)

FFamilyMACPF(5089.1.1.2)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
Iodide ionIOD

+ 1 additive (Glycerin)

Glycerin

Pfam Families

MAC/Perforin domain

ClanCL0293CDC

External Links

ECOD PDB View: 3NSJ RCSB PDB: 3NSJ PDBe: 3NSJ UniProt: P10820

Downloads

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DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.