ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3tnfB1 - ECOD Domain | ECOD

ECOD/Domains/e3tnfB1

e3tnfB1

UID: 000147073

RepresentativePDB

Range: B:202-580
PDB: 3TNF chain B(all domains)
UniProt: Q5ZWZ3 (all domains)
Gene: lpg0940

Molecule: LidA

3D Structure

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Related Domains

Browse other domains in LidA_Long_CC →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupLidA(3282)

HH-groupLidA(3282.1)

TT-groupLidA(3282.1.1)

FFamilyLidA_Long_CC(3282.1.1.1)

Ligands

in contact, ≤ 4 Å

Phosphoaminophosphonic acid guanylate esterGNP
drugDrugBank DB02082

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Pfam Families

PF18641LidA_Long_CC

LidA long coiled-coil domain

External Links

ECOD PDB View: 3TNF RCSB PDB: 3TNF PDBe: 3TNF UniProt: Q5ZWZ3

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.