ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3vabA1 - ECOD Domain | ECOD

ECOD/Domains/e3vabA1

e3vabA1

UID: 000147414

PDB

Range: A:3-33,A:286-422
PDB: 3VAB chain A(all domains)
UniProt: Q8YJJ9 (all domains)
Gene: lysA

Molecule: Diaminopimelate decarboxylase 1

3D Structure

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Related Domains

Browse other domains in Orn_DAP_Arg_deC →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupAlanine racemase-C(1.1.7)

FFamilyOrn_DAP_Arg_deC(1.1.7.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00278Orn_DAP_Arg_deC

Pyridoxal-dependent decarboxylase, C-terminal sheet domain

ClanCL0866ALR_C-like

External Links

ECOD PDB View: 3VAB RCSB PDB: 3VAB PDBe: 3VAB UniProt: Q8YJJ9

Downloads

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