ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3pydA1 - ECOD Domain | ECOD

ECOD/Domains/e3pydA1

e3pydA1

UID: 000147474

PDB

Range: A:5-162
PDB: 3PYD chain A(all domains)
UniProt: P9WKG7 (all domains)
Gene: ispE

Molecule: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase

3D Structure

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Related Domains

Browse other domains in GHMP_kinases_N →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein S5 domain 2-like(212)

HH-groupRibosomal protein S5 domain 2-like(212.1)

TT-groupRibosomal protein S5 domain 2-like(212.1.1)

FFamilyGHMP_kinases_N(212.1.1.3)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00288GHMP_kinases_N

GHMP kinases N terminal domain

ClanCL0329S5

External Links

ECOD PDB View: 3PYD RCSB PDB: 3PYD PDBe: 3PYD UniProt: P9WKG7

Downloads

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