ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e4d6nA1 - ECOD Domain | ECOD

ECOD/Domains/e4d6nA1

e4d6nA1

UID: 001480992

PDB

Range: A:100-187
PDB: 4D6N chain A(all domains)
UniProt: P21505 (all domains)

Molecule: HOMING ENDONUCLEASE I-DMOI

3D Structure

Loading viewer...

Related Domains

Browse other domains in LAGLIDADG_3 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupHoming endonucleases-like(242)

HH-groupHoming endonucleases(242.1)

TT-groupHoming endonucleases(242.1.1)

FFamilyLAGLIDADG_3(242.1.1.7)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 1 additive (Acetate)

AcetateACT
DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF14528LAGLIDADG_3

LAGLIDADG-like domain

ClanCL0324Homing_endonuc

External Links

ECOD PDB View: 4D6N RCSB PDB: 4D6N PDBe: 4D6N UniProt: P21505

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure