ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4rdnB1 - ECOD Domain | ECOD

ECOD/Domains/e4rdnB1

e4rdnB1

UID: 001481923

PDB

Range: B:408-548
PDB: 4RDN chain B(all domains)
UniProt: Q9Y5A9 (all domains)
Gene: YTHDF2

Molecule: YTH domain-containing family protein 2

3D Structure

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Related Domains

Browse other domains in YTH →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupPUA domain(1.1.9)

FFamilyYTH(1.1.9.8)

Ligands

in contact, ≤ 4 Å

N-methyladenosine6MD

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

YT521-B-like domain

ClanCL0178PUA

External Links

ECOD PDB View: 4RDN RCSB PDB: 4RDN PDBe: 4RDN UniProt: Q9Y5A9

Downloads

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