ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4rdoE1 - ECOD Domain | ECOD

ECOD/Domains/e4rdoE1

e4rdoE1

UID: 001481928

PDB

Range: E:408-547
PDB: 4RDO chain E(all domains)
UniProt: Q9Y5A9 (all domains)
Gene: YTHDF2

Molecule: YTH domain-containing family protein 2

3D Structure

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Related Domains

Browse other domains in YTH →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupPUA domain(1.1.9)

FFamilyYTH(1.1.9.8)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

YT521-B-like domain

ClanCL0178PUA

External Links

ECOD PDB View: 4RDO RCSB PDB: 4RDO PDBe: 4RDO UniProt: Q9Y5A9

Downloads

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