ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4pkdB1 - ECOD Domain | ECOD

ECOD/Domains/e4pkdB1

e4pkdB1

UID: 001482427

PDB

Range: B:6-103,B:126-150
PDB: 4PKD chain B(all domains)
UniProt: Q06AA4 (all domains)
Gene: SNRPA

Molecule: U1 small nuclear ribonucleoprotein A,U1 small nuclear ribonucleoprotein 70 kDa

3D Structure

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Related Domains

Browse other domains in RRM_1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupRNA-binding domain, RBD(304.9)

TT-groupRNA-binding domain, RBD(304.9.1)

FFamilyRRM_1(304.9.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Imidazole)

ImidazoleIMD
DrugBank DB03366

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

RNA recognition motif

ClanCL0221RRM

External Links

ECOD PDB View: 4PKD RCSB PDB: 4PKD PDBe: 4PKD UniProt: Q06AA4

Downloads

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