ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3vbfC1 - ECOD Domain | ECOD

ECOD/Domains/e3vbfC1

e3vbfC1

UID: 000148381

PDB

Range: C:1-242
PDB: 3VBF chain C(all domains)
UniProt: B2ZUN0 (all domains)

Molecule: Genome Polyprotein, capsid protein VP3

3D Structure

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Related Domains

Browse other domains in Rhv →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyRhv(10.2.1.1)

Ligands

in contact, ≤ 4 Å

Adenosine phosphateAMP
drugDrugBank DB00131
Chloride ionCL
Potassium ionK

Pfam Families

picornavirus capsid protein

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 3VBF RCSB PDB: 3VBF PDBe: 3VBF UniProt: B2ZUN0

Downloads

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metal

SphingosineSPH

within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.