ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4dqbA1 - ECOD Domain | ECOD

ECOD/Domains/e4dqbA1

e4dqbA1

UID: 000148538

PDB

Range: A:1-99
PDB: 4DQB chain A(all domains)
UniProt: P12499 (all domains)
Gene: gag-pol

Molecule: Aspartyl protease

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

Darunavir017
drugDrugBank DB01264

+ 2 additives (Phosphate ion, 1,2-ETHANEDIOL)

Phosphate ionPO4
DrugBank DB14523

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 4DQB RCSB PDB: 4DQB PDBe: 4DQB UniProt: P12499

Downloads

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within 5 Å only

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.