ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3mkyP1 - ECOD Domain | ECOD

ECOD/Domains/e3mkyP1

e3mkyP1

UID: 001487907

PDB

Range: P:157-270
PDB: 3MKY chain P(all domains)
UniProt: P62558 (all domains)
Gene: sopB

Molecule: Protein sopB

3D Structure

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Related Domains

Browse other domains in SoPB_HTH →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupThree-helical HTH(101.1.1)

FFamilySoPB_HTH(101.1.1.78)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF18090SoPB_HTH

Centromere-binding protein HTH domain

ClanCL0123HTH

External Links

ECOD PDB View: 3MKY RCSB PDB: 3MKY PDBe: 3MKY UniProt: P62558

Downloads

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