ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e4wy0L1 - ECOD Domain | ECOD

ECOD/Domains/e4wy0L1

e4wy0L1

UID: 001489488

PDB

Range: L:16-271
PDB: 4WY0 chain L(all domains)
UniProt: Q5L3Y2 (all domains)
Gene: pdxS

Molecule: Pyridoxal biosynthesis lyase PdxS

3D Structure

Loading viewer...

Related Domains

Browse other domains in SOR_SNZ,ThiG →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilySOR_SNZ,ThiG(2002.1.1.72)

Ligands

in contact, ≤ 4 Å

Ribose-5-phosphateR5P
drugDrugBank DB02053

+ 1 additive (Cacodylate ion)

Cacodylate ionCAC

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01680SOR_SNZ

SOR/SNZ family

ClanCL0036TIM_barrel

Thiazole biosynthesis protein ThiG

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 4WY0 RCSB PDB: 4WY0 PDBe: 4WY0 UniProt: Q5L3Y2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure