ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4wy0D1 - ECOD Domain | ECOD

ECOD/Domains/e4wy0D1

e4wy0D1

UID: 001489490

PDB

Range: D:15-270
PDB: 4WY0 chain D(all domains)
UniProt: Q5L3Y2 (all domains)
Gene: pdxS

Molecule: Pyridoxal biosynthesis lyase PdxS

3D Structure

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Related Domains

Browse other domains in SOR_SNZ,ThiG →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilySOR_SNZ,ThiG(2002.1.1.72)

Ligands

in contact, ≤ 4 Å

Ribose-5-phosphateR5P
drugDrugBank DB02053

+ 2 additives (Phosphate ion, Cacodylate ion)

Phosphate ionPO4
DrugBank DB14523

Pfam Families

PF01680SOR_SNZ

SOR/SNZ family

ClanCL0036TIM_barrel

Thiazole biosynthesis protein ThiG

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 4WY0 RCSB PDB: 4WY0 PDBe: 4WY0 UniProt: Q5L3Y2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Cacodylate ionCAC

Shown in the structure viewer. Drug annotations from DrugDomain.