ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4xl8B1 - ECOD Domain | ECOD

ECOD/Domains/e4xl8B1

e4xl8B1

UID: 001490353

PDB

Range: B:194-363
PDB: 4XL8 chain B(all domains)
UniProt: A0MK70 (all domains)

Molecule: Fiber-1

3D Structure

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Related Domains

Browse other domains in Adeno_knob →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupDomain in virus attachment proteins(5092)

HH-groupDomain in virus attachment proteins(5092.1)

TT-groupDomain in virus attachment proteins(5092.1.1)

FFamilyAdeno_knob(5092.1.1.1)

Ligands

in contact, ≤ 4 Å

AlanineALA
drugDrugBank DB00160
Glutamic acidGLU
drugDrugBank DB00142
Tris(Hydroxyethyl)Aminomethane

Pfam Families

PF00541Adeno_knob

Adenoviral fibre protein (knob domain)

ClanCL0326Reo_sigma

External Links

ECOD PDB View: 4XL8 RCSB PDB: 4XL8 PDBe: 4XL8 UniProt: A0MK70

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB04237

2-O-methyl-5-N-acetyl-alpha-D-neuraminic acidMNA

Shown in the structure viewer. Drug annotations from DrugDomain.