ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4xl8C1 - ECOD Domain | ECOD

ECOD/Domains/e4xl8C1

e4xl8C1

UID: 001490354

PDB

Range: C:183-363
PDB: 4XL8 chain C(all domains)
UniProt: A0MK70 (all domains)

Molecule: Fiber-1

3D Structure

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Related Domains

Browse other domains in Adeno_knob →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupDomain in virus attachment proteins(5092)

HH-groupDomain in virus attachment proteins(5092.1)

TT-groupDomain in virus attachment proteins(5092.1.1)

FFamilyAdeno_knob(5092.1.1.1)

Ligands

in contact, ≤ 4 Å

AlanineALA
drugDrugBank DB00160within 5 Å only
Glutamic acidGLU
drugDrugBank DB00142within 5 Å only

Pfam Families

PF00541Adeno_knob

Adenoviral fibre protein (knob domain)

ClanCL0326Reo_sigma

External Links

ECOD PDB View: 4XL8 RCSB PDB: 4XL8 PDBe: 4XL8 UniProt: A0MK70

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

2-O-methyl-5-N-acetyl-alpha-D-neuraminic acidMNA

(4R)-2-METHYLPENTANE-2,4-DIOLMRD

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.