ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4re5A2 - ECOD Domain | ECOD

ECOD/Domains/e4re5A2

e4re5A2

UID: 001492136

PDB

Range: A:322-581
PDB: 4RE5 chain A(all domains)
UniProt: Q9YBQ2 (all domains)
Gene: APE_1547.1

Molecule: Acylamino-acid-releasing enzyme

3D Structure

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Related Domains

Browse other domains in Peptidase_S9, Peptidase_S15 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta-Hydrolases(7579)

HH-groupalpha/beta-Hydrolases(7579.1)

TT-groupalpha/beta-Hydrolases(7579.1.1)

FFamilyPeptidase_S9, Peptidase_S15(7579.1.1.94)

Ligands

in contact, ≤ 4 Å

N-[(benzyloxy)carbonyl]glycyl-N-[(2S,3R)-4-chloro-3-hydroxy-1-phenylbutan-2-yl]glycinamideY3A

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00326Peptidase_S9

Prolyl oligopeptidase family

ClanCL0028AB_hydrolase

PF02129Peptidase_S15

X-Pro dipeptidyl-peptidase (S15 family)

ClanCL0028AB_hydrolase

External Links

ECOD PDB View: 4RE5 RCSB PDB: 4RE5 PDBe: 4RE5 UniProt: Q9YBQ2

Downloads

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