ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4up4B1 - ECOD Domain | ECOD

ECOD/Domains/e4up4B1

e4up4B1

UID: 001492279

PDB

Range: B:2-400
PDB: 4UP4 chain B(all domains)
UniProt: Q309D1 (all domains)
Gene: pvl

Molecule: LECTIN PVL

3D Structure

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Related Domains

Browse other domains in FG-GAP_3 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupbeta-propeller-like(5)

HH-groupbeta-propeller(5.1)

TT-group7-bladed(5.1.4)

FFamilyFG-GAP_3(5.1.4.43)

Ligands

in contact, ≤ 4 Å

N-acetyl-alpha-D-glucosamineNDG
drugDrugBank DB03740
N-AcetylglucosamineNAG
drugDrugBank DB00141within 5 Å only

Pfam Families

PF13517FG-GAP_3

FG-GAP-like repeat

ClanCL0186Beta_propeller

External Links

ECOD PDB View: 4UP4 RCSB PDB: 4UP4 PDBe: 4UP4 UniProt: Q309D1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Calcium ionCA

metal

Shown in the structure viewer. Drug annotations from DrugDomain.