ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4emdA1 - ECOD Domain | ECOD

ECOD/Domains/e4emdA1

e4emdA1

UID: 000149643

PDB

Range: A:12-170
PDB: 4EMD chain A(all domains)
UniProt: B1MKD5 (all domains)
Gene: ispE

Molecule: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase

3D Structure

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Related Domains

Browse other domains in GHMP_kinases_N →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein S5 domain 2-like(212)

HH-groupRibosomal protein S5 domain 2-like(212.1)

TT-groupRibosomal protein S5 domain 2-like(212.1.1)

FFamilyGHMP_kinases_N(212.1.1.3)

Ligands

in contact, ≤ 4 Å

Cytidine-5'-MonophosphateC5P
drugDrugBank DB03403

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer.

Pfam Families

PF00288GHMP_kinases_N

GHMP kinases N terminal domain

ClanCL0329S5

External Links

ECOD PDB View: 4EMD RCSB PDB: 4EMD PDBe: 4EMD UniProt: B1MKD5

Downloads

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Drug annotations from DrugDomain.