ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4emdA2 - ECOD Domain | ECOD

ECOD/Domains/e4emdA2

e4emdA2

UID: 000149644

PDB

Range: A:171-310
PDB: 4EMD chain A(all domains)
UniProt: B1MKD5 (all domains)
Gene: ispE

Molecule: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase

3D Structure

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Related Domains

Browse other domains in GHMP_kinases_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupGHMP Kinase, C-terminal domain(304.1)

TT-groupGHMP Kinase, C-terminal domain(304.1.1)

FFamilyGHMP_kinases_C(304.1.1.1)

Ligands

in contact, ≤ 4 Å

Cytidine-5'-MonophosphateC5P
drugDrugBank DB03403

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF08544GHMP_kinases_C

GHMP kinases C terminal

ClanCL0677GHMP_C

External Links

ECOD PDB View: 4EMD RCSB PDB: 4EMD PDBe: 4EMD UniProt: B1MKD5

Downloads

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