ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4emfA1 - ECOD Domain | ECOD

ECOD/Domains/e4emfA1

e4emfA1

UID: 000149752

PDB

Range: A:1-246
PDB: 4EMF chain A(all domains)
UniProt: D9J2T9 (all domains)
Gene: RIP

Molecule: rRNA N-glycosidase

3D Structure

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Related Domains

Browse other domains in RIP →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRIP/Polo-box domain(292)

HH-groupRibosome inactivating proteins (RIP)(292.1)

TT-groupRibosome inactivating proteins (RIP)(292.1.1)

FFamilyRIP(292.1.1.1)

Ligands

in contact, ≤ 4 Å

7-methyl-7,8-dihydroguanosine-5'-diphosphateM7G
drugDrugBank DB01960
N-AcetylglucosamineNAG
drugDrugBank DB00141

Pfam Families

Ribosome inactivating protein

External Links

ECOD PDB View: 4EMF RCSB PDB: 4EMF PDBe: 4EMF UniProt: D9J2T9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.