ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4omeA3 - ECOD Domain | ECOD

ECOD/Domains/e4omeA3

e4omeA3

UID: 001498299

PDB

Range: A:55-117,A:351-593
PDB: 4OME chain A(all domains)
UniProt: Q04609 (all domains)
Gene: FOLH1

Molecule: Glutamate carboxypeptidase 2

3D Structure

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Related Domains

Browse other domains in Peptidase_M28 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPhosphorylase/hydrolase-like(2011)

HH-groupZn-dependent exopeptidases(2011.1)

TT-groupZn-dependent exopeptidases(2011.1.1)

FFamilyPeptidase_M28(2011.1.1.8)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
Calcium ionCA
metal
Chloride ion

Pfam Families

PF04389Peptidase_M28

Peptidase family M28

ClanCL0865ZnExoPePases

External Links

ECOD PDB View: 4OME RCSB PDB: 4OME PDBe: 4OME UniProt: Q04609

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(S)-2-(3-((S)-1-carboxy-5-(1,2-dicarba-closo-dodecarboranylamido) pentyl)ureido)pentanedioic acidDGQ

Zinc ionZN

metal

Shown in the structure viewer. Drug annotations from DrugDomain.