ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4q1wA1 - ECOD Domain | ECOD

ECOD/Domains/e4q1wA1

e4q1wA1

UID: 001498314

PDB

Range: A:1-99
PDB: 4Q1W chain A(all domains)
UniProt: V5Y949 (all domains)
Gene: pol

Molecule: ASPARTYL PROTEASE

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

Darunavir017
drugDrugBank DB01264

+ 2 additives (Phosphate ion, Acetate)

Phosphate ionPO4
DrugBank DB14523

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 4Q1W RCSB PDB: 4Q1W PDBe: 4Q1W UniProt: V5Y949

Downloads

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AcetateACT

DrugBank DB14511within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.