ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4xxtA2 - ECOD Domain | ECOD

ECOD/Domains/e4xxtA2

e4xxtA2

UID: 001498421

PDB

Range: A:129-281
PDB: 4XXT chain A(all domains)
UniProt: Q97I32 (all domains)
Gene: CA_C1822

Molecule: Fusion of predicted Zn-dependent amidase/peptidase (Cell wall hydrolase/DD-carboxypeptidase family) and uncharacterized domain of ErfK family peptodoglycan-binding domain

3D Structure

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Related Domains

Browse other domains in YkuD →

Classification

AArchitecturebeta complex topology(a.5)

XX-groupL,D-transpeptidase catalytic domain-like(4091)

HH-groupL,D-transpeptidase catalytic domain-like(4091.1)

TT-groupL,D-transpeptidase catalytic domain-like(4091.1.1)

FFamilyYkuD(4091.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Acetate, 1,2-ETHANEDIOL, Imidazole)

AcetateACT
DrugBank DB14511
1,2-ETHANEDIOLEDO
ImidazoleIMD

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

L,D-transpeptidase catalytic domain

ClanCL0508YkuD

External Links

ECOD PDB View: 4XXT RCSB PDB: 4XXT PDBe: 4XXT UniProt: Q97I32

Downloads

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