ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4x4wA2 - ECOD Domain | ECOD

ECOD/Domains/e4x4wA2

e4x4wA2

UID: 001501291

RepresentativePDB

Range: A:154-409
PDB: 4X4W chain A(all domains)
UniProt: Q96Q11 (all domains)
Gene: TRNT1

Molecule: CCA tRNA nucleotidyltransferase 1, mitochondrial

3D Structure

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Related Domains

Browse other domains in PolyA_pol_RNAbd →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupPDEase-like(131)

HH-groupPoly A polymerase C-terminal region-like(131.2)

TT-groupPoly A polymerase C-terminal region-like(131.2.1)

FFamilyPolyA_pol_RNAbd(131.2.1.3)

Ligands

in contact, ≤ 4 Å

Chloride ionCL

+ 3 additives (Sulfate ion, Citrate anion, Glycerol)

Sulfate ionSO4
DrugBank DB14546
Citrate anionFLC

Pfam Families

PF12627PolyA_pol_RNAbd

Probable RNA and SrmB- binding site of polymerase A

External Links

ECOD PDB View: 4X4W RCSB PDB: 4X4W PDBe: 4X4W UniProt: Q96Q11

Downloads

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GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.