ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4esjA1 - ECOD Domain | ECOD

ECOD/Domains/e4esjA1

e4esjA1

UID: 001503110

RepresentativePDB

Range: A:1-182
PDB: 4ESJ chain A(all domains)
UniProt: P0A460 (all domains)
Gene: dpnC

Molecule: Type-2 restriction enzyme DpnI

3D Structure

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Related Domains

Browse other domains in DpnI →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRestriction endonuclease-like(2008)

HH-groupRestriction endonuclease-like(2008.1)

TT-groupRestriction endonuclease-like(2008.1.1)

FFamilyDpnI(2008.1.1.21)

Ligands

in contact, ≤ 4 Å

Azide ionAZI
Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Dam-replacing family

ClanCL0236PDDEXK

External Links

ECOD PDB View: 4ESJ RCSB PDB: 4ESJ PDBe: 4ESJ UniProt: P0A460

Downloads

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