ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3j9sA1 - ECOD Domain | ECOD

ECOD/Domains/e3j9sA1

e3j9sA1

UID: 001503849

PDB

Range: A:149-332
PDB: 3J9S chain A(all domains)
UniProt: P04509 (all domains)

Molecule: Intermediate capsid protein VP6

3D Structure

Loading viewer...

Related Domains

Browse other domains in Rota_Capsid_VP6 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupViral protein domain(10.5)

TT-groupViral protein domain(10.5.1)

FFamilyRota_Capsid_VP6(10.5.1.3)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Chloride ionCL
Zinc ionZN

Pfam Families

PF00980Rota_Capsid_VP6

Rotavirus major capsid protein VP6

External Links

ECOD PDB View: 3J9S RCSB PDB: 3J9S PDBe: 3J9S UniProt: P04509

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Shown in the structure viewer. Drug annotations from DrugDomain.