ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4dcbA1 - ECOD Domain | ECOD

ECOD/Domains/e4dcbA1

e4dcbA1

UID: 000150515

PDB

Range: A:5-292
PDB: 4DCB chain A(all domains)
UniProt: P17811 (all domains)
Gene: pla

Molecule: Coagulase/fibrinolysin

3D Structure

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Related Domains

Browse other domains in Omptin →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOuter membrane meander beta-barrels(5084)

HH-groupOMPT-like(5084.2)

TT-groupOMPT-like(5084.2.1)

FFamilyOmptin(5084.2.1.1)

Ligands

in contact, ≤ 4 Å

(4R)-2-METHYLPENTANE-2,4-DIOLMRD

+ 3 additives ((Hydroxyethyloxy)Tri(Ethyloxy)Octane, Phosphate ion, (4S)-2-METHYL-2,4-PENTANEDIOL)

(Hydroxyethyloxy)Tri(Ethyloxy)OctaneC8E
DrugBank DB04233
Phosphate ion

Pfam Families

Omptin family

ClanCL0193MBB

External Links

ECOD PDB View: 4DCB RCSB PDB: 4DCB PDBe: 4DCB UniProt: P17811

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14523

(4S)-2-METHYL-2,4-PENTANEDIOLMPD

Shown in the structure viewer. Drug annotations from DrugDomain.