ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ep2A1 - ECOD Domain | ECOD

ECOD/Domains/e4ep2A1

e4ep2A1

UID: 000150563

PDB

Range: A:1-99,A:101-199
PDB: 4EP2 chain A(all domains)
UniProt: P03369 (all domains)
Gene: gag-pol

Molecule: protease, tethered dimer

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Phosphate ion)

GlycerinGOL
DrugBank DB09462
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 4EP2 RCSB PDB: 4EP2 PDBe: 4EP2 UniProt: P03369

Downloads

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