ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4fakA1 - ECOD Domain | ECOD

ECOD/Domains/e4fakA1

e4fakA1

UID: 000150581

PDB

Range: A:-3-159
PDB: 4FAK chain A(all domains)
UniProt: P0C1V0 (all domains)
Gene: rlmH

Molecule: Ribosomal RNA large subunit methyltransferase H

3D Structure

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Related Domains

Browse other domains in SPOUT_MTase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilySPOUT_MTase(2488.1.1.5)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118

+ 2 additives (Phosphate ion, Tetraethylene glycol)

Phosphate ionPO4
DrugBank DB14523

Pfam Families

PF02590SPOUT_MTase

Predicted SPOUT methyltransferase

ClanCL0098SPOUT

External Links

ECOD PDB View: 4FAK RCSB PDB: 4FAK PDBe: 4FAK UniProt: P0C1V0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Tetraethylene glycol

Shown in the structure viewer. Drug annotations from DrugDomain.