ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3uk0A1 - ECOD Domain | ECOD

ECOD/Domains/e3uk0A1

e3uk0A1

UID: 001506641

PDB

Range: A:27-139,A:270-385
PDB: 3UK0 chain A(all domains)
UniProt: Q139W5 (all domains)
Gene: RPD_1889

Molecule: Extracellular ligand-binding receptor

3D Structure

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Related Domains

Browse other domains in Peripla_BP_6 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupPeriplasmic binding protein-like I(2007.1.2)

FFamilyPeripla_BP_6(2007.1.2.13)

Ligands

in contact, ≤ 4 Å

4-Hydroxyphenylpyruvic acidENO
drugDrugBank DB07718

+ 2 additives (1,2-ETHANEDIOL, Sulfate ion)

1,2-ETHANEDIOLEDO
Sulfate ion

Pfam Families

PF13458Peripla_BP_6

Periplasmic binding protein

ClanCL0144Periplas_BP

External Links

ECOD PDB View: 3UK0 RCSB PDB: 3UK0 PDBe: 3UK0 UniProt: Q139W5

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.