ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ogkE1 - ECOD Domain | ECOD

ECOD/Domains/e4ogkE1

e4ogkE1

UID: 001507608

PDB

Range: E:4-253
PDB: 4OGK chain E(all domains)
UniProt: P0A1F6 (all domains)
Gene: udp

Molecule: Uridine phosphorylase

3D Structure

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Related Domains

Browse other domains in PNP_UDP_1 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPhosphorylase/hydrolase-like(2011)

HH-groupPeptidyl-tRNA hydrolase-like(2011.2)

TT-groupPeptidyl-tRNA hydrolase-like(2011.2.1)

FFamilyPNP_UDP_1(2011.2.1.1)

Ligands

in contact, ≤ 4 Å

ThymidineTHM
drugDrugBank DB04485
Potassium ionK
metal

+ 2 additives (1,2-ETHANEDIOL, Tetraethylene glycol)

Pfam Families

PF01048PNP_UDP_1

Phosphorylase superfamily

ClanCL0408PUP

External Links

ECOD PDB View: 4OGK RCSB PDB: 4OGK PDBe: 4OGK UniProt: P0A1F6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOL

Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.