ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4c3iB4 - ECOD Domain | ECOD

ECOD/Domains/e4c3iB4

e4c3iB4

UID: 001508865

PDB

Range: B:762-798,B:912-1040
PDB: 4C3I chain B(all domains)
UniProt: P22138 (all domains)
Gene: RPA135

Molecule: DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA135

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb2_6 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupdouble psi(1.1.2)

FFamilyRNA_pol_Rpb2_6(1.1.2.1)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546within 5 Å only

Shown in the structure viewer.

Pfam Families

PF00562RNA_pol_Rpb2_6

RNA polymerase Rpb2, domain 6

ClanCL0410LEF-8-like

External Links

ECOD PDB View: 4C3I RCSB PDB: 4C3I PDBe: 4C3I UniProt: P22138

Downloads

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Drug annotations from DrugDomain.