ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ag5A1 - ECOD Domain | ECOD

ECOD/Domains/e4ag5A1

e4ag5A1

UID: 000151086

RepresentativePDB

Range: A:205-588
PDB: 4AG5 chain A(all domains)
UniProt: B0KAW2 (all domains)
Gene: Teth39_0060

Molecule: TYPE IV SECRETORY PATHWAY VIRB4 COMPONENTS-LIKE PROTEIN

3D Structure

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Related Domains

Browse other domains in P-loop_TraG →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyP-loop_TraG(2004.1.1.221)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
Magnesium ionMG
metal

+ 2 additives (Glycerin, Sulfate ion)

Pfam Families

PF19044P-loop_TraG

TraG P-loop domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 4AG5 RCSB PDB: 4AG5 PDBe: 4AG5 UniProt: B0KAW2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerinGOL

DrugBank DB09462

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.