ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2vn8B1 - ECOD Domain | ECOD

ECOD/Domains/e2vn8B1

e2vn8B1

UID: 001511325

PDB

Range: B:173-361
PDB: 2VN8 chain B(all domains)
UniProt: Q8WWV3 (all domains)
Gene: RTN4IP1

Molecule: RETICULON-4-INTERACTING PROTEIN 1

3D Structure

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Related Domains

Browse other domains in ADH_zinc_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilyADH_zinc_N(2003.1.1.5)

Ligands

in contact, ≤ 4 Å

NADPHNDP
drugDrugBank DB02338

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer.

Pfam Families

PF00107ADH_zinc_N

Zinc-binding dehydrogenase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 2VN8 RCSB PDB: 2VN8 PDBe: 2VN8 UniProt: Q8WWV3

Downloads

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Drug annotations from DrugDomain.