ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4rygB1 - ECOD Domain | ECOD

ECOD/Domains/e4rygB1

e4rygB1

UID: 001514621

PDB

Range: B:-5-174
PDB: 4RYG chain B(all domains)
UniProt: P00797 (all domains)
Gene: REN

Molecule: Renin

3D Structure

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Related Domains

Browse other domains in Asp, TAXi_N →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyAsp, TAXi_N(1.1.1.27)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
N-({(3S,4S)-4-[(benzylsulfonyl)amino]pyrrolidin-3-yl}methyl)-4-methoxy-3-(3-methoxypropoxy)-N-(propan-2-yl)benzamide3ZJ

+ 2 additives (Dimethyl sulfoxide, Sulfate ion)

Pfam Families

Eukaryotic aspartyl protease

ClanCL0129Peptidase_AA

Xylanase inhibitor N-terminal

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 4RYG RCSB PDB: 4RYG PDBe: 4RYG UniProt: P00797

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Dimethyl sulfoxideDMS

DrugBank DB01093

Sulfate ionSO4

DrugBank DB14546within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.