ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4jxjA1 - ECOD Domain | ECOD

ECOD/Domains/e4jxjA1

e4jxjA1

UID: 001515038

PDB

Range: A:23-204
PDB: 4JXJ chain A(all domains)
UniProt: Q1RK29 (all domains)
Gene: rsmA

Molecule: Ribosomal RNA small subunit methyltransferase A

3D Structure

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Related Domains

Browse other domains in RrnaAD →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyRrnaAD(2003.1.5.2)

Ligands

in contact, ≤ 4 Å

Iodide ionIOD

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Ribosomal RNA adenine dimethylase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 4JXJ RCSB PDB: 4JXJ PDBe: 4JXJ UniProt: Q1RK29

Downloads

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