ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4s23B1 - ECOD Domain | ECOD

ECOD/Domains/e4s23B1

e4s23B1

UID: 001515519

PDB

Range: B:2-291
PDB: 4S23 chain B(all domains)
UniProt: Q84GJ3 (all domains)
Gene: ispG

Molecule: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase

3D Structure

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Related Domains

Browse other domains in GcpE →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyGcpE(2002.1.1.132)

Ligands

in contact, ≤ 4 Å

(2E)-4-hydroxy-3-methylbut-2-en-1-yl trihydrogen diphosphateH6P
Iron/sulfur clusterSF4
within 5 Å only

+ 1 additive (2-(N-morpholino)ethanesulfonic acid)

2-(N-morpholino)ethanesulfonic acid

Pfam Families

GcpE TIM-barrel domain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 4S23 RCSB PDB: 4S23 PDBe: 4S23 UniProt: Q84GJ3

Downloads

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DrugBank DB03814

Shown in the structure viewer. Drug annotations from DrugDomain.