ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3fsyB1 - ECOD Domain | ECOD

ECOD/Domains/e3fsyB1

e3fsyB1

UID: 001516912

PDB

Range: B:149-309
PDB: 3FSY chain B(all domains)
UniProt: P9WP21 (all domains)
Gene: dapD

Molecule: Tetrahydrodipicolinate N-succinyltransferase

3D Structure

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Related Domains

Browse other domains in Hexapep_2 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded left-handed beta-helix(208)

HH-groupTrimeric LpxA-like enzymes(208.1)

TT-groupTrimeric LpxA-like enzymes(208.1.1)

FFamilyHexapep_2(208.1.1.6)

Ligands

in contact, ≤ 4 Å

Succinyl-Coenzyme ASCA
drugDrugBank DB03699
Magnesium ionMG
metal
Sodium ion

Pfam Families

PF14602Hexapep_2

Hexapeptide repeat of succinyl-transferase

ClanCL0536HEXAPEP

External Links

ECOD PDB View: 3FSY RCSB PDB: 3FSY PDBe: 3FSY UniProt: P9WP21

Downloads

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metal

+ 2 additives (Acetic acid, (4r)-2-Methylpentane-2,4-Diol)

Acetic acidACY
DrugBank DB03166
(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.