ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1pdaA3 - ECOD Domain | ECOD

ECOD/Domains/e1pdaA3

e1pdaA3

UID: 001518754

RepresentativePDB

Range: A:103-198
PDB: 1PDA chain A(all domains)
UniProt: P06983 (all domains)
Gene: hemC

Molecule: PORPHOBILINOGEN DEAMINASE

3D Structure

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Related Domains

Browse other domains in Porphobil_deam →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyPorphobil_deam(7523.1.1.6)

Ligands

in contact, ≤ 4 Å

Dipyrromethane CofactorDPM
drugDrugBank DB04517

+ 1 additive (Acetic acid)

Acetic acidACY
DrugBank DB03166

Pfam Families

PF01379Porphobil_deam

Porphobilinogen deaminase, dipyromethane cofactor binding domain

ClanCL0177PBP

External Links

ECOD PDB View: 1PDA RCSB PDB: 1PDA PDBe: 1PDA UniProt: P06983

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.