ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3n5lA1 - ECOD Domain | ECOD

ECOD/Domains/e3n5lA1

e3n5lA1

UID: 001518836

RepresentativePDB

Range: A:26-112,A:228-331
PDB: 3N5L chain A(all domains)
UniProt: Q9HYL8 (all domains)
Gene: PA3383

Molecule: Binding protein component of ABC phosphonate transporter

3D Structure

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Related Domains

Browse other domains in Phosphonate-bd →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyPhosphonate-bd(7523.1.1.25)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Unknown ligandUNL

+ 2 additives (Sulfate ion, 1,2-ETHANEDIOL)

Sulfate ionSO4

Pfam Families

PF12974Phosphonate-bd

ABC transporter, phosphonate, periplasmic substrate-binding protein

ClanCL0177PBP

External Links

ECOD PDB View: 3N5L RCSB PDB: 3N5L PDBe: 3N5L UniProt: Q9HYL8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.