ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4qdiA3 - ECOD Domain | ECOD

ECOD/Domains/e4qdiA3

e4qdiA3

UID: 001519094

PDB

Range: A:9-112
PDB: 4QDI chain A(all domains)
UniProt: B7GVN5 (all domains)

Molecule: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase

3D Structure

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Related Domains

Browse other domains in Mur_ligase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupMurF and HprK N-domain-like(2493)

HH-groupMurF and HprK N-domain-like(2493.1)

TT-groupMurF and HprK N-domain-like(2493.1.1)

FFamilyMur_ligase(2493.1.1.1)

Ligands

in contact, ≤ 4 Å

Uridine-5'-DiphosphateUDP
drugDrugBank DB03435

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01225Mur_ligase

Mur ligase family, catalytic domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 4QDI RCSB PDB: 4QDI PDBe: 4QDI UniProt: B7GVN5

Downloads

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